Report for Sequence Feature Glyma13g33730
Feature Type: gene_model
Chromosome: Gm13
Start: 35462227
stop: 35467049
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g33730
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G53520 AT
Annotation by Michelle Graham. TAIR10: Chalcone-flavanone isomerase family protein | chr1:19976485-19977915 REVERSE LENGTH=287
SoyBase E_val: 3.00E-97 ISS
GO:0006631 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0005504 GO-mf
Annotation by Michelle Graham. GO Molecular Function: fatty acid binding
SoyBase N/A ISS
PF02431 PFAM
Chalcone-flavanone isomerase
JGI ISS
UniRef100_Q53B73 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative chalcone isomerase 3 n=1 Tax=Glycine max RepID=Q53B73_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8LFP0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Chalcone isomerase, putative n=1 Tax=Arabidopsis thaliana RepID=Q8LFP0_ARATH
SoyBase E_val: 6.00E-95 ISS
Proteins Associated with Glyma13g33730
Locus Gene Symbol Protein Name
CHI3 chalcone isomerase 3-like
Expression Patterns of Glyma13g33730
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g33730
Paralog Evidence Comments
Glyma15g39050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g33730 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g262500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g33730
Coding sequences of Glyma13g33730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g33730.1 sequence type=CDS gene model=Glyma13g33730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTTGGAGCTGTAGCAGCTTCCACATCACTATGCTTTTCACCATCCACATACTCCACCAGAATTGTTGTTCTCAGAAGAATCTCAAATTCAACACTGGCATTGAACAATGGTCACTCTTTCTTACTCTTATCAGCTAAACCTATGCATTTCTCTTCACACAAGAGCAGTAGAAGACAACCCCATTTCCTTGCACAAGCTGCTGCATCTTCTGCAGTAAATGCTGAATACGTGGAGGAACCAGCAACAAATGTGAAATTCCAGACATCTTTGAGTTTTCCCGGTTGCTCAAATTCATTAACTTTGTTTGGAACAGGATACAGAGAAAAAGTTTTTGCGATTATTGGTGTCAAGGTCTATGCTGCAGGTTTGTATCTAGATCAATCTATCGCCCTTGAATTGAATGCTTGGAAAGGGCAATCAAAAGAAGCTATTCAAGGGAATTCTTCCTTGTTCGAGACCATTTTCCAATCTTCCTTCGAAAAATCATTGCAAATTATTCTAGTCAGAGATGTTGATGGTAAAACTTTTTGGGATGCCTTAAGTGATGCCATATCACCAAGAATTCAACAACCCACAACCACAGATGAAACTGCTTTGACAACTTTCCGTGGTGTCTTTCTAGATCGCCCTCTTAAGAAAGGAGCTATCATAATTTTGACATGGTTGAACCCCTCCGGATTGCTTGTTTCTGTCTCCTCAAATGGGCTTCCATCTACCATGGATGCTACAATCGAATCTGCAAATGTGGCTTCTGCTCTTTTTAATGTATTCCTTGGAGATAGTCCGGTTTCTCCCTCCTTGAAAGCTTCAGTGGCTGAAAGCTTGTCAAAAGTACTGAAATAA
Predicted protein sequences of Glyma13g33730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g33730.1 sequence type=predicted peptide gene model=Glyma13g33730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLGAVAASTSLCFSPSTYSTRIVVLRRISNSTLALNNGHSFLLLSAKPMHFSSHKSSRRQPHFLAQAAASSAVNAEYVEEPATNVKFQTSLSFPGCSNSLTLFGTGYREKVFAIIGVKVYAAGLYLDQSIALELNAWKGQSKEAIQGNSSLFETIFQSSFEKSLQIILVRDVDGKTFWDALSDAISPRIQQPTTTDETALTTFRGVFLDRPLKKGAIIILTWLNPSGLLVSVSSNGLPSTMDATIESANVASALFNVFLGDSPVSPSLKASVAESLSKVLK*
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